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Name Checker

Please insert a variant description using the HGVS format.

Examples: AB026906.1:c.40_42del, NG_012337.1(SDHD_v001):c.274G>T, LRG_24t1:c.159dup


0 Errors, 0 Warnings.


Overview of the raw variants

Raw variant 1: substitution at 229

TTTTTGGGATGTAGTGAAGAGGCAG G CACTGAGCAACAGTGATTGTGTGCT
TTTTTGGGATGTAGTGAAGAGGCAG C CACTGAGCAACAGTGATTGTGTGCT

View original variant in UCSC Genome Browser

Description relative to transcription start

(Not for use in LSDBs in case of protein-coding transcripts).

NM_176817.4:n.229G>C

Affected transcripts - 1

Affected proteins - 1

NM_176817.4(TAS2R38_i001):p.(Ala49Pro)

Reference protein

  1  MLTLTRIRTV SYEVRSTFLF ISVLEFAVGF LTNAFVFLVN FWDVVKRQAL SNSDCVLLCL
61 SISRLFLHGL LFLSAIQLTH FQKLSEPLNH SYQAIIMLWM IANQANLWLA ACLSLLYCSK
121 LIRFSHTFLI CLASWVSRKI SQMLLGIILC SCICTVLCVW CFFSRPHFTV TTVLFMNNNT
181 RLNWQIKDLN LFYSFLFCYL WSVPPFLLFL VSSGMLTVSL GRHMRTMKVY TRNSRDPSLE
241 AHIKALKSLV SFFCFFVISS CVAFISVPLL ILWRDKIGVM VCVGIMAACP SGHAAILISG
301 NAKLRRAVMT ILLWAQSSLK VRADHKADSR TLC*

Protein predicted from variant coding sequence

  1  MLTLTRIRTV SYEVRSTFLF ISVLEFAVGF LTNAFVFLVN FWDVVKRQPL SNSDCVLLCL
61 SISRLFLHGL LFLSAIQLTH FQKLSEPLNH SYQAIIMLWM IANQANLWLA ACLSLLYCSK
121 LIRFSHTFLI CLASWVSRKI SQMLLGIILC SCICTVLCVW CFFSRPHFTV TTVLFMNNNT
181 RLNWQIKDLN LFYSFLFCYL WSVPPFLLFL VSSGMLTVSL GRHMRTMKVY TRNSRDPSLE
241 AHIKALKSLV SFFCFFVISS CVAFISVPLL ILWRDKIGVM VCVGIMAACP SGHAAILISG
301 NAKLRRAVMT ILLWAQSSLK VRADHKADSR TLC*

Effects on Restriction sites

Raw variant Created Deleted
1 ApeKI, BbvI, CviKI_1, Fnu4HI, TseI Cac8I, LpnPI

Experimental services

Genomic description: 229G>C

Exon information

Number Start (g.) Stop (g.) Start (c.) Stop (c.)
1 1 1143 -84 *57

CDS information

g. c.
Start 85 1
Stop 1086 1002

Links

Download this reference sequence file: NM_176817.4.gb


Name ID Locus tag Product Link method
TAS2R38_v001 NM_176817.4 exhaustion
TAS2R38_i001 NP_789787.4 taste receptor type 2 member 38 exhaustion

Link methods priorities order: protein (NCBI), locus tag, product tag, exhaustion, and construction.