Check out the Mutalyzer 3 Alpha release!

Name Checker

Please insert a variant description using the HGVS format.

Examples: AB026906.1:c.40_42del, NG_012337.1(SDHD_v001):c.274G>T, LRG_24t1:c.159dup

Help

0 Errors, 0 Warnings.

Overview of the raw variants

Raw variant 1: substitution at 2022

TGTACGTCCACATGCTGGCCCGGGC C TGCCAGCACGCCCAGGGCATCGCCC
TGTACGTCCACATGCTGGCCCGGGC G TGCCAGCACGCCCAGGGCATCGCCC

View original variant in UCSC Genome Browser

Description relative to transcription start

(Not for use in LSDBs in case of protein-coding transcripts).

NM_002386.3:n.2022C>G

Affected transcripts - 1

NM_002386.3(MC1R_v001):c.642C>G

Affected proteins - 1

NM_002386.3(MC1R_i001):p.(=)

Reference protein

  1  MAVQGSQRRL LGSLNSTPTA IPQLGLAANQ TGARCLEVSI SDGLFLSLGL VSLVENALVV
 61  ATIAKNRNLH SPMYCFICCL ALSDLLVSGS NVLETAVILL LEAGALVARA AVLQQLDNVI
121  DVITCSSMLS SLCFLGAIAV DRYISIFYAL RYHSIVTLPR ARRAVAAIWV ASVVFSTLFI
181  AYYDHVAVLL CLVVFFLAML VLMAVLYVHM LARACQHAQG IARLHKRQRP VHQGFGLKGA
241  VTLTILLGIF FLCWGPFFLH LTLIVLCPEH PTCGCIFKNF NLFLALIICN AIIDPLIYAF
301  HSQELRRTLK EVLTCSW*

Protein predicted from variant coding sequence

No change: predicted protein (not shown) equals reference protein.

Effects on Restriction sites

Raw variant Created Deleted
1

Experimental services

Genomic description: 2022C>G

Exon information

Number Start (g.) Stop (g.) Start (c.) Stop (c.)
1 1 3099 -1380 *765

CDS information

g. c.
Start 1381 1
Stop 2334 954

Links

Download this reference sequence file: NM_002386.3.gb

Name ID Locus tag Product Link method
MC1R_v001 NM_002386.3 exhaustion
MC1R_i001 NP_002377.4 melanocyte-stimulating hormone receptor exhaustion

Link methods priorities order: protein (NCBI), locus tag, product tag, exhaustion, and construction.